Thanks everyone for your patience and for posting about this issue. It turns out this problem was related to a bug where these changes were not being sent as save requests. This issue has been resolved in the Brooklyn Update 1 - Iteration 2 and Brooklyn - Iteration 6 releases which are now available from the Skuid Releases page.
As a reminder, Salesforce does NOT allow reverting back to prior versions of managed packages. Skuid always recommends installing new versions in a non-business critical sandbox environment to test all mission critical functionality before installing into a production environment. We also recommend that you update out of date themes when you upgrade.
Thanks!
